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@ -1,21 +1,34 @@
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CREATE OR REPLACE FUNCTION CDB_KMeans(query text, no_clusters integer,no_init integer default 20)
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RETURNS table (cartodb_id integer, cluster_no integer) as $$
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from crankshaft.clustering import kmeans
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return kmeans(query,no_clusters,no_init)
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-- Spatial k-means clustering
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$$ language plpythonu;
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CREATE OR REPLACE FUNCTION CDB_KMeans(query text, no_clusters integer, no_init integer default 20)
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RETURNS table (cartodb_id integer, cluster_no integer) as $$
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from crankshaft.clustering import kmeans
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return kmeans(query, no_clusters, no_init)
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$$ LANGUAGE plpythonu;
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-- Non-spatial k-means clustering
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-- query: sql query to retrieve all the needed data
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CREATE OR REPLACE FUNCTION CDB_KMeansNonspatial(query TEXT, col_names TEXT[], no_clusters INTEGER, id_col TEXT DEFAULT 'cartodb_id')
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RETURNS TABLE(rowid BIGINT, cluster_no INTEGER, )
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from crankshaft.clustering import kmeans_nonspatial
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return kmeans_nonspatial(query, colnames, num_clusters, id_col)
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$$ LANGUAGE plpythonu;
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CREATE OR REPLACE FUNCTION CDB_WeightedMeanS(state Numeric[],the_geom GEOMETRY(Point, 4326), weight NUMERIC)
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RETURNS Numeric[] AS
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RETURNS Numeric[] AS
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$$
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DECLARE
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DECLARE
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newX NUMERIC;
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newY NUMERIC;
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newW NUMERIC;
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BEGIN
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IF weight IS NULL OR the_geom IS NULL THEN
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IF weight IS NULL OR the_geom IS NULL THEN
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newX = state[1];
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newY = state[2];
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newW = state[3];
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@ -30,12 +43,12 @@ END
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$$ LANGUAGE plpgsql;
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CREATE OR REPLACE FUNCTION CDB_WeightedMeanF(state Numeric[])
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RETURNS GEOMETRY AS
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RETURNS GEOMETRY AS
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$$
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BEGIN
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IF state[3] = 0 THEN
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IF state[3] = 0 THEN
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RETURN ST_SetSRID(ST_MakePoint(state[1],state[2]), 4326);
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ELSE
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ELSE
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RETURN ST_SETSRID(ST_MakePoint(state[1]/state[3], state[2]/state[3]),4326);
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END IF;
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END
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@ -56,7 +69,7 @@ BEGIN
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SFUNC = CDB_WeightedMeanS,
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FINALFUNC = CDB_WeightedMeanF,
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STYPE = Numeric[],
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INITCOND = "{0.0,0.0,0.0}"
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INITCOND = "{0.0,0.0,0.0}"
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);
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END IF;
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END
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@ -1,18 +1,67 @@
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from sklearn.cluster import KMeans
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import plpy
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def kmeans(query, no_clusters, no_init=20):
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data = plpy.execute('''select array_agg(cartodb_id order by cartodb_id) as ids,
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array_agg(ST_X(the_geom) order by cartodb_id) xs,
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array_agg(ST_Y(the_geom) order by cartodb_id) ys from ({query}) a
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where the_geom is not null
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'''.format(query=query))
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xs = data[0]['xs']
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ys = data[0]['ys']
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def kmeans(query, no_clusters, no_init=20):
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"""
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"""
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full_query = '''
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SELECT array_agg(cartodb_id ORDER BY cartodb_id) as ids,
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array_agg(ST_X(the_geom) ORDER BY cartodb_id) xs,
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array_agg(ST_Y(the_geom) ORDER BY cartodb_id)
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FROM ({query}) As a
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WHERE the_geom IS NOT NULL
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'''.format(query=query)
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try:
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data = plpy.execute(full_query)
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except plpy.SPIError, err:
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plpy.error("KMeans cluster failed: %s" % err)
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xs = data[0]['xs']
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ys = data[0]['ys']
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ids = data[0]['ids']
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km = KMeans(n_clusters= no_clusters, n_init=no_init)
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labels = km.fit_predict(zip(xs,ys))
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return zip(ids,labels)
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km = KMeans(n_clusters=no_clusters, n_init=no_init)
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labels = km.fit_predict(zip(xs, ys))
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return zip(ids, labels)
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def kmeans_nonspatial(query, colnames, num_clusters=5, id_col='cartodb_id'):
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"""
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query (string): A SQL query to retrieve the data required to do the
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k-means clustering analysis, like so:
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SELECT * FROM iris_flower_data
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colnames (list): a list of the column names which contain the data of
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interest, like so: ["sepal_width", "petal_width",
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"sepal_length", "petal_length"]
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num_clusters (int): number of clusters (greater than zero)
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id_col (string): name of the input id_column
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"""
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id_colname = 'rowids'
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full_query = '''
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SELECT {cols}, array_agg({id_col}) As {id_colname}
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FROM ({query}) As a
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'''.format(query=query,
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id_col=id_col,
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id_colname=id_colname,
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cols=', '.join(['array_agg({0}) As col{1}'.format(val, idx)
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for idx, val in enumerate(colnames)]))
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try:
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data = plpy.execute(full_query)
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plpy.notice('query: %s' % full_query)
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# fill array with values for kmeans clustering
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data = np.array([d[c] for c in d if c != 'id_colname'],
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dtype=float).T
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except plpy.SPIError, err:
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plpy.error('KMeans cluster failed: %s' % err)
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kmeans = KMeans(n_clusters=num_clusters, random_state=0).fit(data)
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# zip(ids, labels, means)
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return zip(kmeans.labels_, map(str, kmeans.cluster_centers_),
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d[0]['rowids'])
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