--DO NOT MODIFY THIS FILE, IT IS GENERATED AUTOMATICALLY FROM SOURCES -- Complain if script is sourced in psql, rather than via CREATE EXTENSION \echo Use "CREATE EXTENSION crankshaft" to load this file. \quit -- Version number of the extension release CREATE OR REPLACE FUNCTION cdb_crankshaft_version() RETURNS text AS $$ SELECT '0.6.0'::text; $$ language 'sql' STABLE STRICT; -- Internal identifier of the installed extension instence -- e.g. 'dev' for current development version CREATE OR REPLACE FUNCTION _cdb_crankshaft_internal_version() RETURNS text AS $$ SELECT installed_version FROM pg_available_extensions where name='crankshaft' and pg_available_extensions IS NOT NULL; $$ language 'sql' STABLE STRICT; -- Internal function. -- Set the seeds of the RNGs (Random Number Generators) -- used internally. CREATE OR REPLACE FUNCTION _cdb_random_seeds (seed_value INTEGER) RETURNS VOID AS $$ from crankshaft import random_seeds random_seeds.set_random_seeds(seed_value) $$ LANGUAGE plpythonu; CREATE OR REPLACE FUNCTION CDB_PyAggS(current_state Numeric[], current_row Numeric[]) returns NUMERIC[] as $$ BEGIN if array_upper(current_state,1) is null then RAISE NOTICE 'setting state %',array_upper(current_row,1); current_state[1] = array_upper(current_row,1); end if; return array_cat(current_state,current_row) ; END $$ LANGUAGE plpgsql; -- Create aggregate if it did not exist DO $$ BEGIN IF NOT EXISTS ( SELECT * FROM pg_catalog.pg_proc p LEFT JOIN pg_catalog.pg_namespace n ON n.oid = p.pronamespace WHERE n.nspname = 'cdb_crankshaft' AND p.proname = 'cdb_pyagg' AND p.proisagg) THEN CREATE AGGREGATE CDB_PyAgg(NUMERIC[]) ( SFUNC = CDB_PyAggS, STYPE = Numeric[], INITCOND = "{}" ); END IF; END $$ LANGUAGE plpgsql; CREATE OR REPLACE FUNCTION CDB_CreateAndPredictSegment( target NUMERIC[], features NUMERIC[], target_features NUMERIC[], target_ids NUMERIC[], n_estimators INTEGER DEFAULT 1200, max_depth INTEGER DEFAULT 3, subsample DOUBLE PRECISION DEFAULT 0.5, learning_rate DOUBLE PRECISION DEFAULT 0.01, min_samples_leaf INTEGER DEFAULT 1) RETURNS TABLE(cartodb_id NUMERIC, prediction NUMERIC, accuracy NUMERIC) AS $$ import numpy as np import plpy from crankshaft.segmentation import create_and_predict_segment_agg model_params = {'n_estimators': n_estimators, 'max_depth': max_depth, 'subsample': subsample, 'learning_rate': learning_rate, 'min_samples_leaf': min_samples_leaf} def unpack2D(data): dimension = data.pop(0) a = np.array(data, dtype=float) return a.reshape(len(a)/dimension, dimension) return create_and_predict_segment_agg(np.array(target, dtype=float), unpack2D(features), unpack2D(target_features), target_ids, model_params) $$ LANGUAGE plpythonu; CREATE OR REPLACE FUNCTION CDB_CreateAndPredictSegment ( query TEXT, variable_name TEXT, target_table TEXT, n_estimators INTEGER DEFAULT 1200, max_depth INTEGER DEFAULT 3, subsample DOUBLE PRECISION DEFAULT 0.5, learning_rate DOUBLE PRECISION DEFAULT 0.01, min_samples_leaf INTEGER DEFAULT 1) RETURNS TABLE (cartodb_id TEXT, prediction NUMERIC, accuracy NUMERIC) AS $$ from crankshaft.segmentation import create_and_predict_segment model_params = {'n_estimators': n_estimators, 'max_depth':max_depth, 'subsample' : subsample, 'learning_rate': learning_rate, 'min_samples_leaf' : min_samples_leaf} return create_and_predict_segment(query,variable_name,target_table, model_params) $$ LANGUAGE plpythonu; CREATE OR REPLACE FUNCTION CDB_Gravity( IN target_query text, IN weight_column text, IN source_query text, IN pop_column text, IN target bigint, IN radius integer, IN minval numeric DEFAULT -10e307 ) RETURNS TABLE( the_geom geometry, source_id bigint, target_id bigint, dist numeric, h numeric, hpop numeric) AS $$ DECLARE t_id bigint[]; t_geom geometry[]; t_weight numeric[]; s_id bigint[]; s_geom geometry[]; s_pop numeric[]; BEGIN EXECUTE 'WITH foo as('+target_query+') SELECT array_agg(cartodb_id), array_agg(the_geom), array_agg(' || weight_column || ') FROM foo' INTO t_id, t_geom, t_weight; EXECUTE 'WITH foo as('+source_query+') SELECT array_agg(cartodb_id), array_agg(the_geom), array_agg(' || pop_column || ') FROM foo' INTO s_id, s_geom, s_pop; RETURN QUERY SELECT g.* FROM t, s, CDB_Gravity(t_id, t_geom, t_weight, s_id, s_geom, s_pop, target, radius, minval) g; END; $$ language plpgsql; CREATE OR REPLACE FUNCTION CDB_Gravity( IN t_id bigint[], IN t_geom geometry[], IN t_weight numeric[], IN s_id bigint[], IN s_geom geometry[], IN s_pop numeric[], IN target bigint, IN radius integer, IN minval numeric DEFAULT -10e307 ) RETURNS TABLE( the_geom geometry, source_id bigint, target_id bigint, dist numeric, h numeric, hpop numeric) AS $$ DECLARE t_type text; s_type text; t_center geometry[]; s_center geometry[]; BEGIN t_type := GeometryType(t_geom[1]); s_type := GeometryType(s_geom[1]); IF t_type = 'POINT' THEN t_center := t_geom; ELSE WITH tmp as (SELECT unnest(t_geom) as g) SELECT array_agg(ST_Centroid(g)) INTO t_center FROM tmp; END IF; IF s_type = 'POINT' THEN s_center := s_geom; ELSE WITH tmp as (SELECT unnest(s_geom) as g) SELECT array_agg(ST_Centroid(g)) INTO s_center FROM tmp; END IF; RETURN QUERY with target0 as( SELECT unnest(t_center) as tc, unnest(t_weight) as tw, unnest(t_id) as td ), source0 as( SELECT unnest(s_center) as sc, unnest(s_id) as sd, unnest (s_geom) as sg, unnest(s_pop) as sp ), prev0 as( SELECT source0.sg, source0.sd as sourc_id, coalesce(source0.sp,0) as sp, target.td as targ_id, coalesce(target.tw,0) as tw, GREATEST(1.0,ST_Distance(geography(target.tc), geography(source0.sc)))::numeric as distance FROM source0 CROSS JOIN LATERAL ( SELECT * FROM target0 WHERE tw > minval AND ST_DWithin(geography(source0.sc), geography(tc), radius) ) AS target ), deno as( SELECT sourc_id, sum(tw/distance) as h_deno FROM prev0 GROUP BY sourc_id ) SELECT p.sg as the_geom, p.sourc_id as source_id, p.targ_id as target_id, case when p.distance > 1 then p.distance else 0.0 end as dist, 100*(p.tw/p.distance)/d.h_deno as h, p.sp*(p.tw/p.distance)/d.h_deno as hpop FROM prev0 p, deno d WHERE p.targ_id = target AND p.sourc_id = d.sourc_id; END; $$ language plpgsql; -- 0: nearest neighbor(s) -- 1: barymetric -- 2: IDW -- 3: krigin ---> TO DO CREATE OR REPLACE FUNCTION CDB_SpatialInterpolation( IN query text, IN point geometry, IN method integer DEFAULT 1, IN p1 numeric DEFAULT 0, IN p2 numeric DEFAULT 0 ) RETURNS numeric AS $$ DECLARE gs geometry[]; vs numeric[]; output numeric; BEGIN EXECUTE 'WITH a AS('||query||') SELECT array_agg(the_geom), array_agg(attrib) FROM a' INTO gs, vs; SELECT CDB_SpatialInterpolation(gs, vs, point, method, p1,p2) INTO output FROM a; RETURN output; END; $$ language plpgsql IMMUTABLE; CREATE OR REPLACE FUNCTION CDB_SpatialInterpolation( IN geomin geometry[], IN colin numeric[], IN point geometry, IN method integer DEFAULT 1, IN p1 numeric DEFAULT 0, IN p2 numeric DEFAULT 0 ) RETURNS numeric AS $$ DECLARE gs geometry[]; vs numeric[]; gs2 geometry[]; vs2 numeric[]; g geometry; vertex geometry[]; sg numeric; sa numeric; sb numeric; sc numeric; va numeric; vb numeric; vc numeric; output numeric; BEGIN -- output := -999.999; -- nearest neighbors -- p1: limit the number of neighbors, 0-> closest one IF method = 0 THEN IF p1 = 0 THEN p1 := 1; END IF; WITH a as (SELECT unnest(geomin) as g, unnest(colin) as v), b as (SELECT a.v as v FROM a ORDER BY point<->a.g LIMIT p1::integer) SELECT avg(b.v) INTO output FROM b; RETURN output; -- barymetric ELSIF method = 1 THEN WITH a as (SELECT unnest(geomin) AS e), b as (SELECT ST_DelaunayTriangles(ST_Collect(a.e),0.001, 0) AS t FROM a), c as (SELECT (ST_Dump(t)).geom as v FROM b), d as (SELECT v FROM c WHERE ST_Within(point, v)) SELECT v INTO g FROM d; IF g is null THEN -- out of the realm of the input data RETURN -888.888; END IF; -- vertex of the selected cell WITH a AS (SELECT (ST_DumpPoints(g)).geom AS v) SELECT array_agg(v) INTO vertex FROM a; -- retrieve the value of each vertex WITH a AS(SELECT unnest(geomin) as geo, unnest(colin) as c) SELECT c INTO va FROM a WHERE ST_Equals(geo, vertex[1]); WITH a AS(SELECT unnest(geomin) as geo, unnest(colin) as c) SELECT c INTO vb FROM a WHERE ST_Equals(geo, vertex[2]); WITH a AS(SELECT unnest(geomin) as geo, unnest(colin) as c) SELECT c INTO vc FROM a WHERE ST_Equals(geo, vertex[3]); SELECT ST_area(g), ST_area(ST_MakePolygon(ST_MakeLine(ARRAY[point, vertex[2], vertex[3], point]))), ST_area(ST_MakePolygon(ST_MakeLine(ARRAY[point, vertex[1], vertex[3], point]))), ST_area(ST_MakePolygon(ST_MakeLine(ARRAY[point,vertex[1],vertex[2], point]))) INTO sg, sa, sb, sc; output := (coalesce(sa,0) * coalesce(va,0) + coalesce(sb,0) * coalesce(vb,0) + coalesce(sc,0) * coalesce(vc,0)) / coalesce(sg); RETURN output; -- IDW -- p1: limit the number of neighbors, 0->no limit -- p2: order of distance decay, 0-> order 1 ELSIF method = 2 THEN IF p2 = 0 THEN p2 := 1; END IF; WITH a as (SELECT unnest(geomin) as g, unnest(colin) as v), b as (SELECT a.g, a.v FROM a ORDER BY point<->a.g) SELECT array_agg(b.g), array_agg(b.v) INTO gs, vs FROM b; IF p1::integer>0 THEN gs2:=gs; vs2:=vs; FOR i IN 1..p1 LOOP gs2 := gs2 || gs[i]; vs2 := vs2 || vs[i]; END LOOP; ELSE gs2:=gs; vs2:=vs; END IF; WITH a as (SELECT unnest(gs2) as g, unnest(vs2) as v), b as ( SELECT (1/ST_distance(point, a.g)^p2::integer) as k, (a.v/ST_distance(point, a.g)^p2::integer) as f FROM a ) SELECT sum(b.f)/sum(b.k) INTO output FROM b; RETURN output; -- krigin ELSIF method = 3 THEN -- TO DO END IF; RETURN -777.777; END; $$ language plpgsql IMMUTABLE; -- ============================================================================================= -- -- CDB_Voronoi -- -- ============================================================================================= CREATE OR REPLACE FUNCTION CDB_voronoi( IN geomin geometry[], IN buffer numeric DEFAULT 0.5, IN tolerance numeric DEFAULT 1e-9 ) RETURNS geometry AS $$ DECLARE geomout geometry; BEGIN -- we need to make the geometry calculations in (pseudo)meters!!! with a as ( SELECT unnest(geomin) as g1 ), b as( SELECT st_transform(g1, 3857) g2 from a ) SELECT array_agg(g2) INTO geomin from b; WITH convexhull_1 as ( SELECT ST_ConvexHull(ST_Collect(geomin)) as g, buffer * |/ (st_area(ST_ConvexHull(ST_Collect(geomin)))/PI()) as r ), clipper as( SELECT st_buffer(ST_MinimumBoundingCircle(a.g), buffer*a.r) as g FROM convexhull_1 a ), env0 as ( SELECT (st_dumppoints(st_expand(a.g, buffer*a.r))).geom as e FROM convexhull_1 a ), env as ( SELECT array_agg(env0.e) as e FROM env0 ), sample AS ( SELECT ST_Collect(geomin || env.e) as geom FROM env ), convexhull as ( SELECT ST_ConvexHull(ST_Collect(geomin)) as cg ), tin as ( SELECT ST_Dump(ST_DelaunayTriangles(geom, tolerance, 0)) as gd FROM sample ), tin_polygons as ( SELECT (gd).Path as id, (gd).Geom as pg, ST_Centroid(ST_MinimumBoundingCircle((gd).Geom, 180)) as ct FROM tin ), tin_lines as ( SELECT id, ST_ExteriorRing(pg) as lg FROM tin_polygons ), tin_nodes as ( SELECT id, ST_PointN(lg,1) p1, ST_PointN(lg,2) p2, ST_PointN(lg,3) p3 FROM tin_lines ), tin_edges AS ( SELECT p.id, UNNEST(ARRAY[ ST_MakeLine(n.p1,n.p2) , ST_MakeLine(n.p2,n.p3) , ST_MakeLine(n.p3,n.p1)]) as Edge, ST_Force2D(cdb_crankshaft._Find_Circle(n.p1,n.p2,n.p3)) as ct, CASE WHEN st_distance(p.ct, ST_ExteriorRing(p.pg)) < tolerance THEN TRUE ELSE FALSE END AS ctx, p.pg, ST_within(p.ct, convexhull.cg) as ctin FROM tin_polygons p, tin_nodes n, convexhull WHERE p.id = n.id ), voro_nodes as ( SELECT CASE WHEN x.ctx = TRUE THEN ST_Centroid(x.edge) ELSE x.ct END as xct, CASE WHEN y.id is null THEN CASE WHEN x.ctin = TRUE THEN ST_SetSRID(ST_MakePoint( ST_X(x.ct) + ((ST_X(ST_Centroid(x.edge)) - ST_X(x.ct)) * (1+buffer)), ST_Y(x.ct) + ((ST_Y(ST_Centroid(x.edge)) - ST_Y(x.ct)) * (1+buffer)) ), ST_SRID(x.ct)) END ELSE y.ct END as yct FROM tin_edges x LEFT OUTER JOIN tin_edges y ON x.id <> y.id AND ST_Equals(x.edge, y.edge) ), voro_edges as( SELECT ST_LineMerge(ST_Collect(ST_MakeLine(xct, yct))) as v FROM voro_nodes ), voro_cells as( SELECT ST_Polygonize( ST_Node( ST_LineMerge( ST_Union(v, ST_ExteriorRing( ST_Convexhull(v) ) ) ) ) ) as g FROM voro_edges ), voro_set as( SELECT (st_dump(v.g)).geom as g FROM voro_cells v ), clipped_voro as( SELECT ST_intersection(c.g, v.g) as g FROM voro_set v, clipper c WHERE ST_GeometryType(v.g) = 'ST_Polygon' ) SELECT st_collect( ST_Transform( ST_ConvexHull(g), 4326 ) ) INTO geomout FROM clipped_voro; RETURN geomout; END; $$ language plpgsql IMMUTABLE; /** ---------------------------------------------------------------------------------------- * @function : FindCircle * @precis : Function that determines if three points form a circle. If so a table containing * centre and radius is returned. If not, a null table is returned. * @version : 1.0.1 * @param : p_pt1 : First point in curve * @param : p_pt2 : Second point in curve * @param : p_pt3 : Third point in curve * @return : geometry : In which X,Y ordinates are the centre X, Y and the Z being the radius of found circle * or NULL if three points do not form a circle. * @history : Simon Greener - Feb 2012 - Original coding. * Rafa de la Torre - Aug 2016 - Small fix for type checking * @copyright : Simon Greener @ 2012 * Licensed under a Creative Commons Attribution-Share Alike 2.5 Australia License. (http://creativecommons.org/licenses/by-sa/2.5/au/) **/ CREATE OR REPLACE FUNCTION _Find_Circle( IN p_pt1 geometry, IN p_pt2 geometry, IN p_pt3 geometry) RETURNS geometry AS $BODY$ DECLARE v_Centre geometry; v_radius NUMERIC; v_CX NUMERIC; v_CY NUMERIC; v_dA NUMERIC; v_dB NUMERIC; v_dC NUMERIC; v_dD NUMERIC; v_dE NUMERIC; v_dF NUMERIC; v_dG NUMERIC; BEGIN IF ( p_pt1 IS NULL OR p_pt2 IS NULL OR p_pt3 IS NULL ) THEN RAISE EXCEPTION 'All supplied points must be not null.'; RETURN NULL; END IF; IF ( ST_GeometryType(p_pt1) <> 'ST_Point' OR ST_GeometryType(p_pt2) <> 'ST_Point' OR ST_GeometryType(p_pt3) <> 'ST_Point' ) THEN RAISE EXCEPTION 'All supplied geometries must be points.'; RETURN NULL; END IF; v_dA := ST_X(p_pt2) - ST_X(p_pt1); v_dB := ST_Y(p_pt2) - ST_Y(p_pt1); v_dC := ST_X(p_pt3) - ST_X(p_pt1); v_dD := ST_Y(p_pt3) - ST_Y(p_pt1); v_dE := v_dA * (ST_X(p_pt1) + ST_X(p_pt2)) + v_dB * (ST_Y(p_pt1) + ST_Y(p_pt2)); v_dF := v_dC * (ST_X(p_pt1) + ST_X(p_pt3)) + v_dD * (ST_Y(p_pt1) + ST_Y(p_pt3)); v_dG := 2.0 * (v_dA * (ST_Y(p_pt3) - ST_Y(p_pt2)) - v_dB * (ST_X(p_pt3) - ST_X(p_pt2))); -- If v_dG is zero then the three points are collinear and no finite-radius -- circle through them exists. IF ( v_dG = 0 ) THEN RETURN NULL; ELSE v_CX := (v_dD * v_dE - v_dB * v_dF) / v_dG; v_CY := (v_dA * v_dF - v_dC * v_dE) / v_dG; v_Radius := SQRT(POWER(ST_X(p_pt1) - v_CX,2) + POWER(ST_Y(p_pt1) - v_CY,2) ); END IF; RETURN ST_SetSRID(ST_MakePoint(v_CX, v_CY, v_radius),ST_Srid(p_pt1)); END; $BODY$ LANGUAGE plpgsql VOLATILE STRICT; -- Moran's I Global Measure (public-facing) CREATE OR REPLACE FUNCTION CDB_AreasOfInterestGlobal( subquery TEXT, column_name TEXT, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 99, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE (moran NUMERIC, significance NUMERIC) AS $$ from crankshaft.clustering import Moran # TODO: use named parameters or a dictionary moran = Moran() return moran.global_stat(subquery, column_name, w_type, num_ngbrs, permutations, geom_col, id_col) $$ LANGUAGE plpythonu; -- Moran's I Local (internal function) CREATE OR REPLACE FUNCTION _CDB_AreasOfInterestLocal( subquery TEXT, column_name TEXT, w_type TEXT, num_ngbrs INT, permutations INT, geom_col TEXT, id_col TEXT) RETURNS TABLE (moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC) AS $$ from crankshaft.clustering import Moran moran = Moran() # TODO: use named parameters or a dictionary return moran.local_stat(subquery, column_name, w_type, num_ngbrs, permutations, geom_col, id_col) $$ LANGUAGE plpythonu; -- Moran's I Local (public-facing function) CREATE OR REPLACE FUNCTION CDB_AreasOfInterestLocal( subquery TEXT, column_name TEXT, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 99, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE (moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC) AS $$ SELECT moran, quads, significance, rowid, vals FROM cdb_crankshaft._CDB_AreasOfInterestLocal(subquery, column_name, w_type, num_ngbrs, permutations, geom_col, id_col); $$ LANGUAGE SQL; -- Moran's I only for HH and HL (public-facing function) CREATE OR REPLACE FUNCTION CDB_GetSpatialHotspots( subquery TEXT, column_name TEXT, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 99, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE (moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC) AS $$ SELECT moran, quads, significance, rowid, vals FROM cdb_crankshaft._CDB_AreasOfInterestLocal(subquery, column_name, w_type, num_ngbrs, permutations, geom_col, id_col) WHERE quads IN ('HH', 'HL'); $$ LANGUAGE SQL; -- Moran's I only for LL and LH (public-facing function) CREATE OR REPLACE FUNCTION CDB_GetSpatialColdspots( subquery TEXT, attr TEXT, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 99, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE (moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC) AS $$ SELECT moran, quads, significance, rowid, vals FROM cdb_crankshaft._CDB_AreasOfInterestLocal(subquery, attr, w_type, num_ngbrs, permutations, geom_col, id_col) WHERE quads IN ('LL', 'LH'); $$ LANGUAGE SQL; -- Moran's I only for LH and HL (public-facing function) CREATE OR REPLACE FUNCTION CDB_GetSpatialOutliers( subquery TEXT, attr TEXT, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 99, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE (moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC) AS $$ SELECT moran, quads, significance, rowid, vals FROM cdb_crankshaft._CDB_AreasOfInterestLocal(subquery, attr, w_type, num_ngbrs, permutations, geom_col, id_col) WHERE quads IN ('HL', 'LH'); $$ LANGUAGE SQL; -- Moran's I Global Rate (public-facing function) CREATE OR REPLACE FUNCTION CDB_AreasOfInterestGlobalRate( subquery TEXT, numerator TEXT, denominator TEXT, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 99, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE (moran FLOAT, significance FLOAT) AS $$ from crankshaft.clustering import Moran moran = Moran() # TODO: use named parameters or a dictionary return moran.global_rate_stat(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col) $$ LANGUAGE plpythonu; -- Moran's I Local Rate (internal function) CREATE OR REPLACE FUNCTION _CDB_AreasOfInterestLocalRate( subquery TEXT, numerator TEXT, denominator TEXT, w_type TEXT, num_ngbrs INT, permutations INT, geom_col TEXT, id_col TEXT) RETURNS TABLE(moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC) AS $$ from crankshaft.clustering import Moran moran = Moran() # TODO: use named parameters or a dictionary return moran.local_rate_stat(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col) $$ LANGUAGE plpythonu; -- Moran's I Local Rate (public-facing function) CREATE OR REPLACE FUNCTION CDB_AreasOfInterestLocalRate( subquery TEXT, numerator TEXT, denominator TEXT, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 99, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE(moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC) AS $$ SELECT moran, quads, significance, rowid, vals FROM cdb_crankshaft._CDB_AreasOfInterestLocalRate(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col); $$ LANGUAGE SQL; -- Moran's I Local Rate only for HH and HL (public-facing function) CREATE OR REPLACE FUNCTION CDB_GetSpatialHotspotsRate( subquery TEXT, numerator TEXT, denominator TEXT, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 99, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE(moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC) AS $$ SELECT moran, quads, significance, rowid, vals FROM cdb_crankshaft._CDB_AreasOfInterestLocalRate(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col) WHERE quads IN ('HH', 'HL'); $$ LANGUAGE SQL; -- Moran's I Local Rate only for LL and LH (public-facing function) CREATE OR REPLACE FUNCTION CDB_GetSpatialColdspotsRate( subquery TEXT, numerator TEXT, denominator TEXT, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 99, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE(moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC) AS $$ SELECT moran, quads, significance, rowid, vals FROM cdb_crankshaft._CDB_AreasOfInterestLocalRate(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col) WHERE quads IN ('LL', 'LH'); $$ LANGUAGE SQL; -- Moran's I Local Rate only for LH and HL (public-facing function) CREATE OR REPLACE FUNCTION CDB_GetSpatialOutliersRate( subquery TEXT, numerator TEXT, denominator TEXT, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 99, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE(moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC) AS $$ SELECT moran, quads, significance, rowid, vals FROM cdb_crankshaft._CDB_AreasOfInterestLocalRate(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col) WHERE quads IN ('HL', 'LH'); $$ LANGUAGE SQL; -- Spatial k-means clustering CREATE OR REPLACE FUNCTION CDB_KMeans(query text, no_clusters integer, no_init integer default 20) RETURNS table (cartodb_id integer, cluster_no integer) as $$ from crankshaft.clustering import Kmeans kmeans = Kmeans() return kmeans.spatial(query, no_clusters, no_init) $$ LANGUAGE plpythonu; CREATE OR REPLACE FUNCTION CDB_WeightedMeanS(state Numeric[],the_geom GEOMETRY(Point, 4326), weight NUMERIC) RETURNS Numeric[] AS $$ DECLARE newX NUMERIC; newY NUMERIC; newW NUMERIC; BEGIN IF weight IS NULL OR the_geom IS NULL THEN newX = state[1]; newY = state[2]; newW = state[3]; ELSE newX = state[1] + ST_X(the_geom)*weight; newY = state[2] + ST_Y(the_geom)*weight; newW = state[3] + weight; END IF; RETURN Array[newX,newY,newW]; END $$ LANGUAGE plpgsql; CREATE OR REPLACE FUNCTION CDB_WeightedMeanF(state Numeric[]) RETURNS GEOMETRY AS $$ BEGIN IF state[3] = 0 THEN RETURN ST_SetSRID(ST_MakePoint(state[1],state[2]), 4326); ELSE RETURN ST_SETSRID(ST_MakePoint(state[1]/state[3], state[2]/state[3]),4326); END IF; END $$ LANGUAGE plpgsql; -- Create aggregate if it did not exist DO $$ BEGIN IF NOT EXISTS ( SELECT * FROM pg_catalog.pg_proc p LEFT JOIN pg_catalog.pg_namespace n ON n.oid = p.pronamespace WHERE n.nspname = 'cdb_crankshaft' AND p.proname = 'cdb_weightedmean' AND p.proisagg) THEN CREATE AGGREGATE CDB_WeightedMean(geometry(Point, 4326), NUMERIC) ( SFUNC = CDB_WeightedMeanS, FINALFUNC = CDB_WeightedMeanF, STYPE = Numeric[], INITCOND = "{0.0,0.0,0.0}" ); END IF; END $$ LANGUAGE plpgsql; -- Spatial Markov -- input table format: -- id | geom | date_1 | date_2 | date_3 -- 1 | Pt1 | 12.3 | 13.1 | 14.2 -- 2 | Pt2 | 11.0 | 13.2 | 12.5 -- ... -- Sample Function call: -- SELECT CDB_SpatialMarkov('SELECT * FROM real_estate', -- Array['date_1', 'date_2', 'date_3']) CREATE OR REPLACE FUNCTION CDB_SpatialMarkovTrend ( subquery TEXT, time_cols TEXT[], num_classes INT DEFAULT 7, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 99, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE (trend NUMERIC, trend_up NUMERIC, trend_down NUMERIC, volatility NUMERIC, rowid INT) AS $$ from crankshaft.space_time_dynamics import Markov markov = Markov() ## TODO: use named parameters or a dictionary return markov.spatial_trend(subquery, time_cols, num_classes, w_type, num_ngbrs, permutations, geom_col, id_col) $$ LANGUAGE plpythonu; -- input table format: identical to above but in a predictable format -- Sample function call: -- SELECT cdb_spatial_markov('SELECT * FROM real_estate', -- 'date_1') -- CREATE OR REPLACE FUNCTION -- cdb_spatial_markov ( -- subquery TEXT, -- time_col_min text, -- time_col_max text, -- date_format text, -- '_YYYY_MM_DD' -- num_time_per_bin INT DEFAULT 1, -- permutations INT DEFAULT 99, -- geom_column TEXT DEFAULT 'the_geom', -- id_col TEXT DEFAULT 'cartodb_id', -- w_type TEXT DEFAULT 'knn', -- num_ngbrs int DEFAULT 5) -- RETURNS TABLE (moran FLOAT, quads TEXT, significance FLOAT, ids INT) -- AS $$ -- plpy.execute('SELECT cdb_crankshaft._cdb_crankshaft_activate_py()') -- from crankshaft.clustering import moran_local -- # TODO: use named parameters or a dictionary -- return spatial_markov(subquery, time_cols, permutations, geom_column, id_col, w_type, num_ngbrs) -- $$ LANGUAGE plpythonu; -- -- -- input table format: -- -- id | geom | date | measurement -- -- 1 | Pt1 | 12/3 | 13.2 -- -- 2 | Pt2 | 11/5 | 11.3 -- -- 3 | Pt1 | 11/13 | 12.9 -- -- 4 | Pt3 | 12/19 | 10.1 -- -- ... -- -- CREATE OR REPLACE FUNCTION -- cdb_spatial_markov ( -- subquery TEXT, -- time_col text, -- num_time_per_bin INT DEFAULT 1, -- permutations INT DEFAULT 99, -- geom_column TEXT DEFAULT 'the_geom', -- id_col TEXT DEFAULT 'cartodb_id', -- w_type TEXT DEFAULT 'knn', -- num_ngbrs int DEFAULT 5) -- RETURNS TABLE (moran FLOAT, quads TEXT, significance FLOAT, ids INT) -- AS $$ -- plpy.execute('SELECT cdb_crankshaft._cdb_crankshaft_activate_py()') -- from crankshaft.clustering import moran_local -- # TODO: use named parameters or a dictionary -- return spatial_markov(subquery, time_cols, permutations, geom_column, id_col, w_type, num_ngbrs) -- $$ LANGUAGE plpythonu; -- Based on: -- https://github.com/mapbox/polylabel/blob/master/index.js -- https://sites.google.com/site/polesofinaccessibility/ -- Requires: https://github.com/CartoDB/cartodb-postgresql -- Based on: -- https://github.com/mapbox/polylabel/blob/master/index.js -- https://sites.google.com/site/polesofinaccessibility/ -- Requires: https://github.com/CartoDB/cartodb-postgresql CREATE OR REPLACE FUNCTION CDB_PIA( IN polygon geometry, IN tolerance numeric DEFAULT 1.0 ) RETURNS geometry AS $$ DECLARE env geometry[]; cells geometry[]; cell geometry; best_c geometry; best_d numeric; test_d numeric; test_mx numeric; test_h numeric; test_cells geometry[]; width numeric; height numeric; h numeric; i integer; n integer; sqr numeric; p geometry; BEGIN sqr := |/2; polygon := ST_Transform(polygon, 3857); -- grid #0 cell size height := ST_YMax(polygon) - ST_YMin(polygon); width := ST_XMax(polygon) - ST_XMin(polygon); h := 0.5*LEAST(height, width); -- grid #0 with c1 as( SELECT cdb_crankshaft.CDB_RectangleGrid(polygon, h, h) as c ) SELECT array_agg(c) INTO cells FROM c1; -- 1st guess: centroid best_d := cdb_crankshaft._Signed_Dist(polygon, ST_Centroid(Polygon)); -- looping the loop n := array_length(cells,1); i := 1; LOOP EXIT WHEN i > n; cell := cells[i]; i := i+1; -- cell side size, it's square test_h := ST_XMax(cell) - ST_XMin(cell) ; -- check distance test_d := cdb_crankshaft._Signed_Dist(polygon, ST_Centroid(cell)); IF test_d > best_d THEN best_d := test_d; best_c := cells[i]; END IF; -- longest distance within the cell test_mx := test_d + (test_h/2 * sqr); -- if the cell has no chance to contains the desired point, continue CONTINUE WHEN test_mx - best_d <= tolerance; -- resample the cell with c1 as( SELECT cdb_crankshaft.CDB_RectangleGrid(cell, test_h/2, test_h/2) as c ) SELECT array_agg(c) INTO test_cells FROM c1; -- concat the new cells to the former array cells := cells || test_cells; -- prepare next iteration n := array_length(cells,1); END LOOP; RETURN ST_transform(ST_Centroid(best_c), 4326); END; $$ language plpgsql IMMUTABLE; -- signed distance point to polygon with holes -- negative is the point is out the polygon CREATE OR REPLACE FUNCTION _Signed_Dist( IN polygon geometry, IN point geometry ) RETURNS numeric AS $$ DECLARE i integer; within integer; holes integer; dist numeric; BEGIN dist := 1e999; SELECT LEAST(dist, ST_distance(point, ST_ExteriorRing(polygon))::numeric) INTO dist; SELECT CASE WHEN ST_Within(point,polygon) THEN 1 ELSE -1 END INTO within; SELECT ST_NumInteriorRings(polygon) INTO holes; IF holes > 0 THEN FOR i IN 1..holes LOOP SELECT LEAST(dist, ST_distance(point, ST_InteriorRingN(polygon, i))::numeric) INTO dist; END LOOP; END IF; dist := dist * within::numeric; RETURN dist; END; $$ language plpgsql IMMUTABLE; -- -- Iterative densification of a set of points using Delaunay triangulation -- the new points have as assigned value the average value of the 3 vertex (centroid) -- -- @param geomin - array of geometries (points) -- -- @param colin - array of numeric values in that points -- -- @param iterations - integer, number of iterations -- -- -- Returns: TABLE(geomout geometry, colout numeric) -- -- CREATE OR REPLACE FUNCTION CDB_Densify( IN geomin geometry[], IN colin numeric[], IN iterations integer ) RETURNS TABLE(geomout geometry, colout numeric) AS $$ DECLARE geotemp geometry[]; coltemp numeric[]; i integer; gs geometry[]; g geometry; vertex geometry[]; va numeric; vb numeric; vc numeric; center geometry; centerval numeric; tmp integer; BEGIN geotemp := geomin; coltemp := colin; FOR i IN 1..iterations LOOP -- generate TIN WITH a as (SELECT unnest(geotemp) AS e), b as (SELECT ST_DelaunayTriangles(ST_Collect(a.e),0.001, 0) AS t FROM a), c as (SELECT (ST_Dump(t)).geom AS v FROM b) SELECT array_agg(v) INTO gs FROM c; -- loop cells FOREACH g IN ARRAY gs LOOP -- append centroid SELECT ST_Centroid(g) INTO center; geotemp := array_append(geotemp, center); -- retrieve the value of each vertex WITH a AS (SELECT (ST_DumpPoints(g)).geom AS v) SELECT array_agg(v) INTO vertex FROM a; WITH a AS(SELECT unnest(geotemp) as geo, unnest(coltemp) as c) SELECT c INTO va FROM a WHERE ST_Equals(geo, vertex[1]); WITH a AS(SELECT unnest(geotemp) as geo, unnest(coltemp) as c) SELECT c INTO vb FROM a WHERE ST_Equals(geo, vertex[2]); WITH a AS(SELECT unnest(geotemp) as geo, unnest(coltemp) as c) SELECT c INTO vc FROM a WHERE ST_Equals(geo, vertex[3]); -- calc the value at the center centerval := (va + vb + vc) / 3; -- append the value coltemp := array_append(coltemp, centerval); END LOOP; END LOOP; RETURN QUERY SELECT unnest(geotemp ) as geomout, unnest(coltemp ) as colout; END; $$ language plpgsql IMMUTABLE; CREATE OR REPLACE FUNCTION CDB_TINmap( IN geomin geometry[], IN colin numeric[], IN iterations integer ) RETURNS TABLE(geomout geometry, colout numeric) AS $$ DECLARE p geometry[]; vals numeric[]; gs geometry[]; g geometry; vertex geometry[]; centerval numeric; va numeric; vb numeric; vc numeric; coltemp numeric[]; BEGIN SELECT array_agg(dens.geomout), array_agg(dens.colout) INTO p, vals FROM cdb_crankshaft.CDB_Densify(geomin, colin, iterations) dens; WITH a as (SELECT unnest(p) AS e), b as (SELECT ST_DelaunayTriangles(ST_Collect(a.e),0.001, 0) AS t FROM a), c as (SELECT (ST_Dump(t)).geom AS v FROM b) SELECT array_agg(v) INTO gs FROM c; FOREACH g IN ARRAY gs LOOP -- retrieve the vertex of each triangle WITH a AS (SELECT (ST_DumpPoints(g)).geom AS v) SELECT array_agg(v) INTO vertex FROM a; -- retrieve the value of each vertex WITH a AS(SELECT unnest(p) as geo, unnest(vals) as c) SELECT c INTO va FROM a WHERE ST_Equals(geo, vertex[1]); WITH a AS(SELECT unnest(p) as geo, unnest(vals) as c) SELECT c INTO vb FROM a WHERE ST_Equals(geo, vertex[2]); WITH a AS(SELECT unnest(p) as geo, unnest(vals) as c) SELECT c INTO vc FROM a WHERE ST_Equals(geo, vertex[3]); -- calc the value at the center centerval := (va + vb + vc) / 3; -- append the value coltemp := array_append(coltemp, centerval); END LOOP; RETURN QUERY SELECT unnest(gs) as geomout, unnest(coltemp ) as colout; END; $$ language plpgsql IMMUTABLE; -- Getis-Ord's G -- Hotspot/Coldspot Analysis tool CREATE OR REPLACE FUNCTION CDB_GetisOrdsG( subquery TEXT, column_name TEXT, w_type TEXT DEFAULT 'knn', num_ngbrs INT DEFAULT 5, permutations INT DEFAULT 999, geom_col TEXT DEFAULT 'the_geom', id_col TEXT DEFAULT 'cartodb_id') RETURNS TABLE (z_score NUMERIC, p_value NUMERIC, p_z_sim NUMERIC, rowid BIGINT) AS $$ from crankshaft.clustering import Getis getis = Getis() return getis.getis_ord(subquery, column_name, w_type, num_ngbrs, permutations, geom_col, id_col) $$ LANGUAGE plpythonu; -- TODO: make a version that accepts the values as arrays -- Find outliers using a static threshold -- CREATE OR REPLACE FUNCTION CDB_StaticOutlier(column_value numeric, threshold numeric) RETURNS boolean AS $$ BEGIN RETURN column_value > threshold; END; $$ LANGUAGE plpgsql; -- Find outliers by a percentage above the threshold -- TODO: add symmetric option? `is_symmetric boolean DEFAULT false` CREATE OR REPLACE FUNCTION CDB_PercentOutlier(column_values numeric[], outlier_fraction numeric, ids int[]) RETURNS TABLE(is_outlier boolean, rowid int) AS $$ DECLARE avg_val numeric; out_vals boolean[]; BEGIN SELECT avg(i) INTO avg_val FROM unnest(column_values) As x(i); IF avg_val = 0 THEN RAISE EXCEPTION 'Mean value is zero. Try another outlier method.'; END IF; SELECT array_agg( outlier_fraction < i / avg_val) INTO out_vals FROM unnest(column_values) As x(i); RETURN QUERY SELECT unnest(out_vals) As is_outlier, unnest(ids) As rowid; END; $$ LANGUAGE plpgsql; -- Find outliers above a given number of standard deviations from the mean CREATE OR REPLACE FUNCTION CDB_StdDevOutlier(column_values numeric[], num_deviations numeric, ids int[], is_symmetric boolean DEFAULT true) RETURNS TABLE(is_outlier boolean, rowid int) AS $$ DECLARE stddev_val numeric; avg_val numeric; out_vals boolean[]; BEGIN SELECT stddev(i), avg(i) INTO stddev_val, avg_val FROM unnest(column_values) As x(i); IF stddev_val = 0 THEN RAISE EXCEPTION 'Standard deviation of input data is zero'; END IF; IF is_symmetric THEN SELECT array_agg( abs(i - avg_val) / stddev_val > num_deviations) INTO out_vals FROM unnest(column_values) As x(i); ELSE SELECT array_agg( (i - avg_val) / stddev_val > num_deviations) INTO out_vals FROM unnest(column_values) As x(i); END IF; RETURN QUERY SELECT unnest(out_vals) As is_outlier, unnest(ids) As rowid; END; $$ LANGUAGE plpgsql; CREATE OR REPLACE FUNCTION CDB_Contour( IN geomin geometry[], IN colin numeric[], IN buffer numeric, IN intmethod integer, IN classmethod integer, IN steps integer, IN max_time integer DEFAULT 60000 ) RETURNS TABLE( the_geom geometry, bin integer, min_value numeric, max_value numeric, avg_value numeric ) AS $$ DECLARE cell_count integer; tin geometry[]; resolution integer; BEGIN -- nasty trick to override issue #121 IF max_time = 0 THEN max_time = -90; END IF; resolution := max_time; max_time := -1 * resolution; -- calc the optimal number of cells for the current dataset SELECT CASE intmethod WHEN 0 THEN round(3.7745903782 * max_time - 9.4399210051 * array_length(geomin,1) - 1350.8778213073) WHEN 1 THEN round(2.2855592156 * max_time - 87.285217133 * array_length(geomin,1) + 17255.7085601797) WHEN 2 THEN round(0.9799471999 * max_time - 127.0334085369 * array_length(geomin,1) + 22707.9579721218) ELSE 10000 END INTO cell_count; -- we don't have iterative barycentric interpolation in CDB_interpolation, -- and it's a costy function, so let's make a custom one here till -- we update the code -- tin := ARRAY[]::geometry[]; IF intmethod=1 THEN WITH a as (SELECT unnest(geomin) AS e), b as (SELECT ST_DelaunayTriangles(ST_Collect(a.e),0.001, 0) AS t FROM a), c as (SELECT (ST_Dump(t)).geom as v FROM b) SELECT array_agg(v) INTO tin FROM c; END IF; -- Delaunay stuff performed just ONCE!! -- magic RETURN QUERY WITH convexhull as ( SELECT ST_ConvexHull(ST_Collect(geomin)) as g, buffer * |/ st_area(ST_ConvexHull(ST_Collect(geomin)))/PI() as r ), envelope as ( SELECT st_expand(a.g, a.r) as e FROM convexhull a ), envelope3857 as( SELECT ST_Transform(e, 3857) as geom FROM envelope ), resolution as( SELECT CASE WHEN resolution <= 0 THEN round(|/ ( ST_area(geom) / abs(cell_count) )) ELSE resolution END AS cell FROM envelope3857 ), grid as( SELECT ST_Transform(cdb_crankshaft.CDB_RectangleGrid(e.geom, r.cell, r.cell), 4326) as geom FROM envelope3857 e, resolution r ), interp as( SELECT geom, CASE WHEN intmethod=1 THEN cdb_crankshaft._interp_in_tin(geomin, colin, tin, ST_Centroid(geom)) ELSE cdb_crankshaft.CDB_SpatialInterpolation(geomin, colin, ST_Centroid(geom), intmethod) END as val FROM grid ), classes as( SELECT CASE WHEN classmethod = 0 THEN cdb_crankshaft.CDB_EqualIntervalBins(array_agg(val), steps) WHEN classmethod = 1 THEN cdb_crankshaft.CDB_HeadsTailsBins(array_agg(val), steps) WHEN classmethod = 2 THEN cdb_crankshaft.CDB_JenksBins(array_agg(val), steps) ELSE cdb_crankshaft.CDB_QuantileBins(array_agg(val), steps) END as b FROM interp where val is not null ), classified as( SELECT i.*, width_bucket(i.val, c.b) as bucket FROM interp i left join classes c ON 1=1 ), classified2 as( SELECT geom, val, CASE WHEN bucket = steps THEN bucket - 1 ELSE bucket END as b FROM classified ), final as( SELECT st_union(geom) as the_geom, b as bin, min(val) as min_value, max(val) as max_value, avg(val) as avg_value FROM classified2 GROUP BY bin ) SELECT * FROM final where final.bin is not null ; END; $$ language plpgsql; -- ===================================================================== -- Interp in grid, so we can use barycentric with a precalculated tin (NNI) -- ===================================================================== CREATE OR REPLACE FUNCTION _interp_in_tin( IN geomin geometry[], IN colin numeric[], IN tin geometry[], IN point geometry ) RETURNS numeric AS $$ DECLARE g geometry; vertex geometry[]; sg numeric; sa numeric; sb numeric; sc numeric; va numeric; vb numeric; vc numeric; output numeric; BEGIN -- get the cell the point is within WITH a as (SELECT unnest(tin) as v), b as (SELECT v FROM a WHERE ST_Within(point, v)) SELECT v INTO g FROM b; -- if we're out of the data realm, -- return null IF g is null THEN RETURN null; END IF; -- vertex of the selected cell WITH a AS ( SELECT (ST_DumpPoints(g)).geom AS v ) SELECT array_agg(v) INTO vertex FROM a; -- retrieve the value of each vertex WITH a AS(SELECT unnest(geomin) as geo, unnest(colin) as c) SELECT c INTO va FROM a WHERE ST_Equals(geo, vertex[1]); WITH a AS(SELECT unnest(geomin) as geo, unnest(colin) as c) SELECT c INTO vb FROM a WHERE ST_Equals(geo, vertex[2]); WITH a AS(SELECT unnest(geomin) as geo, unnest(colin) as c) SELECT c INTO vc FROM a WHERE ST_Equals(geo, vertex[3]); -- calc the areas SELECT ST_area(g), ST_area(ST_MakePolygon(ST_MakeLine(ARRAY[point, vertex[2], vertex[3], point]))), ST_area(ST_MakePolygon(ST_MakeLine(ARRAY[point, vertex[1], vertex[3], point]))), ST_area(ST_MakePolygon(ST_MakeLine(ARRAY[point,vertex[1],vertex[2], point]))) INTO sg, sa, sb, sc; output := (coalesce(sa,0) * coalesce(va,0) + coalesce(sb,0) * coalesce(vb,0) + coalesce(sc,0) * coalesce(vc,0)) / coalesce(sg,1); RETURN output; END; $$ language plpgsql; -- Function by Stuart Lynn for a simple interpolation of a value -- from a polygon table over an arbitrary polygon -- (weighted by the area proportion overlapped) -- Aereal weighting is a very simple form of aereal interpolation. -- -- Parameters: -- * geom a Polygon geometry which defines the area where a value will be -- estimated as the area-weighted sum of a given table/column -- * target_table_name table name of the table that provides the values -- * target_column column name of the column that provides the values -- * schema_name optional parameter to defina the schema the target table -- belongs to, which is necessary if its not in the search_path. -- Note that target_table_name should never include the schema in it. -- Return value: -- Aereal-weighted interpolation of the column values over the geometry CREATE OR REPLACE FUNCTION cdb_overlap_sum(geom geometry, target_table_name text, target_column text, schema_name text DEFAULT NULL) RETURNS numeric AS $$ DECLARE result numeric; qualified_name text; BEGIN IF schema_name IS NULL THEN qualified_name := Format('%I', target_table_name); ELSE qualified_name := Format('%I.%s', schema_name, target_table_name); END IF; EXECUTE Format(' SELECT sum(%I*ST_Area(St_Intersection($1, a.the_geom))/ST_Area(a.the_geom)) FROM %s AS a WHERE $1 && a.the_geom ', target_column, qualified_name) USING geom INTO result; RETURN result; END; $$ LANGUAGE plpgsql; CREATE OR REPLACE FUNCTION CDB_GWR(subquery text, dep_var text, ind_vars text[], bw numeric default null, fixed boolean default False, kernel text default 'bisquare', geom_col text default 'the_geom', id_col text default 'cartodb_id') RETURNS table(coeffs JSON, stand_errs JSON, t_vals JSON, filtered_t_vals JSON, predicted numeric, residuals numeric, r_squared numeric, bandwidth numeric, rowid bigint) AS $$ from crankshaft.regression import GWR gwr = GWR() return gwr.gwr(subquery, dep_var, ind_vars, bw, fixed, kernel, geom_col, id_col) $$ LANGUAGE plpythonu; CREATE OR REPLACE FUNCTION CDB_GWR_Predict(subquery text, dep_var text, ind_vars text[], bw numeric default null, fixed boolean default False, kernel text default 'bisquare', geom_col text default 'the_geom', id_col text default 'cartodb_id') RETURNS table(coeffs JSON, stand_errs JSON, t_vals JSON, r_squared numeric, predicted numeric, rowid bigint) AS $$ from crankshaft.regression import GWR gwr = GWR() return gwr.gwr_predict(subquery, dep_var, ind_vars, bw, fixed, kernel, geom_col, id_col) $$ LANGUAGE plpythonu; -- -- Creates N points randomly distributed arround the polygon -- -- @param g - the geometry to be turned in to points -- -- @param no_points - the number of points to generate -- -- @params max_iter_per_point - the function generates points in the polygon's bounding box -- and discards points which don't lie in the polygon. max_iter_per_point specifies how many -- misses per point the funciton accepts before giving up. -- -- Returns: Multipoint with the requested points CREATE OR REPLACE FUNCTION cdb_dot_density(geom geometry , no_points Integer, max_iter_per_point Integer DEFAULT 1000) RETURNS GEOMETRY AS $$ DECLARE extent GEOMETRY; test_point Geometry; width NUMERIC; height NUMERIC; x0 NUMERIC; y0 NUMERIC; xp NUMERIC; yp NUMERIC; no_left INTEGER; remaining_iterations INTEGER; points GEOMETRY[]; bbox_line GEOMETRY; intersection_line GEOMETRY; BEGIN extent := ST_Envelope(geom); width := ST_XMax(extent) - ST_XMIN(extent); height := ST_YMax(extent) - ST_YMIN(extent); x0 := ST_XMin(extent); y0 := ST_YMin(extent); no_left := no_points; LOOP if(no_left=0) THEN EXIT; END IF; yp = y0 + height*random(); bbox_line = ST_MakeLine( ST_SetSRID(ST_MakePoint(yp, x0),4326), ST_SetSRID(ST_MakePoint(yp, x0+width),4326) ); intersection_line = ST_Intersection(bbox_line,geom); test_point = ST_LineInterpolatePoint(st_makeline(st_linemerge(intersection_line)),random()); points := points || test_point; no_left = no_left - 1 ; END LOOP; RETURN ST_Collect(points); END; $$ LANGUAGE plpgsql VOLATILE; -- Make sure by default there are no permissions for publicuser -- NOTE: this happens at extension creation time, as part of an implicit transaction. -- REVOKE ALL PRIVILEGES ON SCHEMA cdb_crankshaft FROM PUBLIC, publicuser CASCADE; -- Grant permissions on the schema to publicuser (but just the schema) GRANT USAGE ON SCHEMA cdb_crankshaft TO publicuser; -- Revoke execute permissions on all functions in the schema by default -- REVOKE EXECUTE ON ALL FUNCTIONS IN SCHEMA cdb_crankshaft FROM PUBLIC, publicuser; -- -- Fill given extent with a rectangular coverage -- -- @param ext Extent to fill. Only rectangles with center point falling -- inside the extent (or at the lower or leftmost edge) will -- be emitted. The returned hexagons will have the same SRID -- as this extent. -- -- @param width With of each rectangle -- -- @param height Height of each rectangle -- -- @param origin Optional origin to allow for exact tiling. -- If omitted the origin will be 0,0. -- The parameter is checked for having the same SRID -- as the extent. -- -- CREATE OR REPLACE FUNCTION CDB_RectangleGrid(ext GEOMETRY, width FLOAT8, height FLOAT8, origin GEOMETRY DEFAULT NULL) RETURNS SETOF GEOMETRY AS $$ DECLARE h GEOMETRY; -- rectangle cell hstep FLOAT8; -- horizontal step vstep FLOAT8; -- vertical step hw FLOAT8; -- half width hh FLOAT8; -- half height vstart FLOAT8; hstart FLOAT8; hend FLOAT8; vend FLOAT8; xoff FLOAT8; yoff FLOAT8; xgrd FLOAT8; ygrd FLOAT8; x FLOAT8; y FLOAT8; srid INTEGER; BEGIN srid := ST_SRID(ext); xoff := 0; yoff := 0; IF origin IS NOT NULL THEN IF ST_SRID(origin) != srid THEN RAISE EXCEPTION 'SRID mismatch between extent (%) and origin (%)', srid, ST_SRID(origin); END IF; xoff := ST_X(origin); yoff := ST_Y(origin); END IF; --RAISE DEBUG 'X offset: %', xoff; --RAISE DEBUG 'Y offset: %', yoff; hw := width/2.0; hh := height/2.0; xgrd := hw; ygrd := hh; --RAISE DEBUG 'X grid size: %', xgrd; --RAISE DEBUG 'Y grid size: %', ygrd; hstep := width; vstep := height; -- Tweak horizontal start on hstep grid from origin hstart := xoff + ceil((ST_XMin(ext)-xoff)/hstep)*hstep; --RAISE DEBUG 'hstart: %', hstart; -- Tweak vertical start on vstep grid from origin vstart := yoff + ceil((ST_Ymin(ext)-yoff)/vstep)*vstep; --RAISE DEBUG 'vstart: %', vstart; hend := ST_XMax(ext); vend := ST_YMax(ext); --RAISE DEBUG 'hend: %', hend; --RAISE DEBUG 'vend: %', vend; x := hstart; WHILE x < hend LOOP -- over X y := vstart; h := ST_MakeEnvelope(x-hw, y-hh, x+hw, y+hh, srid); WHILE y < vend LOOP -- over Y RETURN NEXT h; h := ST_Translate(h, 0, vstep); y := yoff + round(((y + vstep)-yoff)/ygrd)*ygrd; -- round to grid END LOOP; x := xoff + round(((x + hstep)-xoff)/xgrd)*xgrd; -- round to grid END LOOP; RETURN; END $$ LANGUAGE 'plpgsql' IMMUTABLE; -- -- Calculate the equal interval bins for a given column -- -- @param in_array A numeric array of numbers to determine the best -- to determine the bin boundary -- -- @param breaks The number of bins you want to find. -- -- -- Returns: upper edges of bins -- -- CREATE OR REPLACE FUNCTION CDB_EqualIntervalBins ( in_array NUMERIC[], breaks INT ) RETURNS NUMERIC[] as $$ DECLARE diff numeric; min_val numeric; max_val numeric; tmp_val numeric; i INT := 1; reply numeric[]; BEGIN SELECT min(e), max(e) INTO min_val, max_val FROM ( SELECT unnest(in_array) e ) x WHERE e IS NOT NULL; diff = (max_val - min_val) / breaks::numeric; LOOP IF i < breaks THEN tmp_val = min_val + i::numeric * diff; reply = array_append(reply, tmp_val); i := i+1; ELSE reply = array_append(reply, max_val); EXIT; END IF; END LOOP; RETURN reply; END; $$ language plpgsql IMMUTABLE; -- -- Determine the Heads/Tails classifications from a numeric array -- -- @param in_array A numeric array of numbers to determine the best -- bins based on the Heads/Tails method. -- -- @param breaks The number of bins you want to find. -- -- CREATE OR REPLACE FUNCTION CDB_HeadsTailsBins ( in_array NUMERIC[], breaks INT) RETURNS NUMERIC[] as $$ DECLARE element_count INT4; arr_mean numeric; i INT := 2; reply numeric[]; BEGIN -- get the total size of our row element_count := array_upper(in_array, 1) - array_lower(in_array, 1); -- ensure the ordering of in_array SELECT array_agg(e) INTO in_array FROM (SELECT unnest(in_array) e ORDER BY e) x; -- stop if no rows IF element_count IS NULL THEN RETURN NULL; END IF; -- stop if our breaks are more than our input array size IF element_count < breaks THEN RETURN in_array; END IF; -- get our mean value SELECT avg(v) INTO arr_mean FROM ( SELECT unnest(in_array) as v ) x; reply = Array[arr_mean]; -- slice our bread LOOP IF i > breaks THEN EXIT; END IF; SELECT avg(e) INTO arr_mean FROM ( SELECT unnest(in_array) e) x WHERE e > reply[i-1]; IF arr_mean IS NOT NULL THEN reply = array_append(reply, arr_mean); END IF; i := i+1; END LOOP; RETURN reply; END; $$ language plpgsql IMMUTABLE; -- -- Determine the Jenks classifications from a numeric array -- -- @param in_array A numeric array of numbers to determine the best -- bins based on the Jenks method. -- -- @param breaks The number of bins you want to find. -- -- @param iterations The number of different starting positions to test. -- -- @param invert Optional wheter to return the top of each bin (default) -- or the bottom. BOOLEAN, default=FALSE. -- -- CREATE OR REPLACE FUNCTION CDB_JenksBins ( in_array NUMERIC[], breaks INT, iterations INT DEFAULT 5, invert BOOLEAN DEFAULT FALSE) RETURNS NUMERIC[] as $$ DECLARE element_count INT4; arr_mean NUMERIC; bot INT; top INT; tops INT[]; classes INT[][]; i INT := 1; j INT := 1; curr_result NUMERIC[]; best_result NUMERIC[]; seedtarget TEXT; quant NUMERIC[]; shuffles INT; BEGIN -- get the total size of our row element_count := array_length(in_array, 1); --array_upper(in_array, 1) - array_lower(in_array, 1); -- ensure the ordering of in_array SELECT array_agg(e) INTO in_array FROM (SELECT unnest(in_array) e ORDER BY e) x; -- stop if no rows IF element_count IS NULL THEN RETURN NULL; END IF; -- stop if our breaks are more than our input array size IF element_count < breaks THEN RETURN in_array; END IF; shuffles := LEAST(GREATEST(floor(2500000.0/(element_count::float*iterations::float)), 1), 750)::int; -- get our mean value SELECT avg(v) INTO arr_mean FROM ( SELECT unnest(in_array) as v ) x; -- assume best is actually Quantile SELECT cdb_crankshaft.CDB_QuantileBins(in_array, breaks) INTO quant; -- if data is very very large, just return quant and be done IF element_count > 5000000 THEN RETURN quant; END IF; -- change quant into bottom, top markers LOOP IF i = 1 THEN bot = 1; ELSE -- use last top to find this bot bot = top+1; END IF; IF i = breaks THEN top = element_count; ELSE SELECT count(*) INTO top FROM ( SELECT unnest(in_array) as v) x WHERE v <= quant[i]; END IF; IF i = 1 THEN classes = ARRAY[ARRAY[bot,top]]; ELSE classes = ARRAY_CAT(classes,ARRAY[bot,top]); END IF; IF i > breaks THEN EXIT; END IF; i = i+1; END LOOP; best_result = cdb_crankshaft.CDB_JenksBinsIteration( in_array, breaks, classes, invert, element_count, arr_mean, shuffles); --set the seed so we can ensure the same results SELECT setseed(0.4567) INTO seedtarget; --loop through random starting positions LOOP IF j > iterations-1 THEN EXIT; END IF; i = 1; tops = ARRAY[element_count]; LOOP IF i = breaks THEN EXIT; END IF; SELECT array_agg(distinct e) INTO tops FROM (SELECT unnest(array_cat(tops, ARRAY[floor(random()*element_count::float)::int])) as e ORDER BY e) x WHERE e != 1; i = array_length(tops, 1); END LOOP; i = 1; LOOP IF i > breaks THEN EXIT; END IF; IF i = 1 THEN bot = 1; ELSE bot = top+1; END IF; top = tops[i]; IF i = 1 THEN classes = ARRAY[ARRAY[bot,top]]; ELSE classes = ARRAY_CAT(classes,ARRAY[bot,top]); END IF; i := i+1; END LOOP; curr_result = cdb_crankshaft.CDB_JenksBinsIteration( in_array, breaks, classes, invert, element_count, arr_mean, shuffles); IF curr_result[1] > best_result[1] THEN best_result = curr_result; j = j-1; -- if we found a better result, add one more search END IF; j = j+1; END LOOP; RETURN (best_result)[2:array_upper(best_result, 1)]; END; $$ language plpgsql IMMUTABLE; -- -- Perform a single iteration of the Jenks classification -- CREATE OR REPLACE FUNCTION CDB_JenksBinsIteration ( in_array NUMERIC[], breaks INT, classes INT[][], invert BOOLEAN, element_count INT4, arr_mean NUMERIC, max_search INT DEFAULT 50) RETURNS NUMERIC[] as $$ DECLARE tmp_val numeric; new_classes int[][]; tmp_class int[]; i INT := 1; j INT := 1; side INT := 2; sdam numeric; gvf numeric := 0.0; new_gvf numeric; arr_gvf numeric[]; class_avg numeric; class_max_i INT; class_min_i INT; class_max numeric; class_min numeric; reply numeric[]; BEGIN -- Calculate the sum of squared deviations from the array mean (SDAM). SELECT sum((arr_mean - e)^2) INTO sdam FROM ( SELECT unnest(in_array) as e ) x; --Identify the breaks for the lowest GVF LOOP i = 1; LOOP -- get our mean SELECT avg(e) INTO class_avg FROM ( SELECT unnest(in_array[classes[i][1]:classes[i][2]]) as e) x; -- find the deviation SELECT sum((class_avg-e)^2) INTO tmp_val FROM ( SELECT unnest(in_array[classes[i][1]:classes[i][2]]) as e ) x; IF i = 1 THEN arr_gvf = ARRAY[tmp_val]; -- init our min/max map for later class_max = arr_gvf[i]; class_min = arr_gvf[i]; class_min_i = 1; class_max_i = 1; ELSE arr_gvf = array_append(arr_gvf, tmp_val); END IF; i := i+1; IF i > breaks THEN EXIT; END IF; END LOOP; -- calculate our new GVF SELECT sdam-sum(e) INTO new_gvf FROM ( SELECT unnest(arr_gvf) as e ) x; -- if no improvement was made, exit IF new_gvf < gvf THEN EXIT; END IF; gvf = new_gvf; IF j > max_search THEN EXIT; END IF; j = j+1; i = 1; LOOP --establish directionality (uppward through classes or downward) IF arr_gvf[i] < class_min THEN class_min = arr_gvf[i]; class_min_i = i; END IF; IF arr_gvf[i] > class_max THEN class_max = arr_gvf[i]; class_max_i = i; END IF; i := i+1; IF i > breaks THEN EXIT; END IF; END LOOP; IF class_max_i > class_min_i THEN class_min_i = class_max_i - 1; ELSE class_min_i = class_max_i + 1; END IF; --Move from higher class to a lower gid order IF class_max_i > class_min_i THEN classes[class_max_i][1] = classes[class_max_i][1] + 1; classes[class_min_i][2] = classes[class_min_i][2] + 1; ELSE -- Move from lower class UP into a higher class by gid classes[class_max_i][2] = classes[class_max_i][2] - 1; classes[class_min_i][1] = classes[class_min_i][1] - 1; END IF; END LOOP; i = 1; LOOP IF invert = TRUE THEN side = 1; --default returns bottom side of breaks, invert returns top side END IF; reply = array_append(reply, in_array[classes[i][side]]); i = i+1; IF i > breaks THEN EXIT; END IF; END LOOP; RETURN array_prepend(gvf, reply); END; $$ language plpgsql IMMUTABLE; -- -- Determine the Quantile classifications from a numeric array -- -- @param in_array A numeric array of numbers to determine the best -- bins based on the Quantile method. -- -- @param breaks The number of bins you want to find. -- -- CREATE OR REPLACE FUNCTION CDB_QuantileBins ( in_array NUMERIC[], breaks INT) RETURNS NUMERIC[] as $$ DECLARE element_count INT4; break_size numeric; tmp_val numeric; i INT := 1; reply numeric[]; BEGIN -- sort our values SELECT array_agg(e) INTO in_array FROM (SELECT unnest(in_array) e ORDER BY e ASC) x; -- get the total size of our data element_count := array_length(in_array, 1); break_size := element_count::numeric / breaks; -- slice our bread LOOP IF i < breaks THEN IF break_size * i % 1 > 0 THEN SELECT e INTO tmp_val FROM ( SELECT unnest(in_array) e LIMIT 1 OFFSET ceil(break_size * i) - 1) x; ELSE SELECT avg(e) INTO tmp_val FROM ( SELECT unnest(in_array) e LIMIT 2 OFFSET ceil(break_size * i) - 1 ) x; END IF; ELSIF i = breaks THEN -- select the last value SELECT max(e) INTO tmp_val FROM ( SELECT unnest(in_array) e ) x; ELSE EXIT; END IF; reply = array_append(reply, tmp_val); i := i+1; END LOOP; RETURN reply; END; $$ language plpgsql IMMUTABLE;